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ERX12663732: Illumina NovaSeq 6000 paired end sequencing
1 ILLUMINA (Illumina NovaSeq 6000) run: 295,510 spots, 130.3M bases, 40.1Mb downloads

Submitted by: Institute of Environmental Biotechnology
Study: Endophytic bacterial communities of perennial wheatgrass and annual wheat
show Abstracthide Abstract
Here, we studied the endophytic bacterial microbiome of perennial wheatgrass in comparison with annual wheat in a pan-European gradient. Samples were collected from two plant genotypes (Thinopyrum intermedium L. and Triticum aestivum L.), three compartments (roots, stems, and leaves), three sampling sites (France-St. Marcel, Belgium-Gembloux, Sweden-Lönnstorp), and two harvest years (June 2021 and April 2022). Samples were surface sterilized, DNA was extracted, the 16S rRNA gene fragment (V3-V4) was amplified and the amplicons were sent for high-throughput sequencing. In total, 704 samples were successfully amplified and sequenced.
Sample:
SAMEA115677145 • ERS20186073 • All experiments • All runs
Library:
Name: Library E
Instrument: Illumina NovaSeq 6000
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 295,510 spots, 130.3M bases, 40.1Mb
Run# of Spots# of BasesSizePublished
ERR13293032295,510130.3M40.1Mb2024-07-29

ID:
34424074

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